Code-Ignitor Accessing Sub folder withing same domain

I have deployed a web project using code-ignitor and its working fine.

Ex :-

But now we are trying to changed UI and for that I have given a sub folder within the same domain for the UI team to do the changes and test.Note that I have moved whole project to that sub folder while current site is still working

Now I have both 


Issue here is when ever we try to access the project in 

initially it loads it home page of 

but when I click the links it always goes to the 

not the sub domain site.

I will be really appreciate if you could help me to figure it out.

Source: .htaccess

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